Discovering Spatial Relationships Between Approximately Equivalent Patterns in Contact Maps
نویسندگان
چکیده
We present a method for finding relationships between approximate patterns in contact maps. We examine contact maps generated from protein data in order to discover spatial relationships among the connected patterns contained in those maps. We discuss our criteria for determining whether two patterns are approximately equivalent as well as the motivation behind our work. Finally, we provide results that validate our efforts.
منابع مشابه
GIS-based analysis of spatial distribution patterns of growing degree-days for agricultural applications in Iran
The geographical distribution of growing degree-days (GDDs) within Iran was studied using GIS-based maps. GDDs were calculated using daily thermal parameters (daily maximum and minimum air temperature). Based on the purpose of the study and climatic conditions of Iran, the average value of 5?C was chosen for GDD calculation. The calculations were carried out using daily weather data of 113 mete...
متن کاملA novel method for discovering local spatial clusters of genomic regions with functional relationships from DNA contact maps
MOTIVATION The three-dimensional structure of genomes makes it possible for genomic regions not adjacent in the primary sequence to be spatially proximal. These DNA contacts have been found to be related to various molecular activities. Previous methods for analyzing DNA contact maps obtained from Hi-C experiments have largely focused on studying individual interactions, forming spatial cluster...
متن کاملExploring the Patterns of In-Between Spaces in Guilan Historical Houses
The aim of this paper is to explain the spatial patterns of in-between spaces in Guilan historical houses in order to show their potential capacity in having various functions, and thus different forms, in the course of history. In-between spaces are mediators between two other spaces making them accessible or visible for each other. An explanation of their spatial patterns can both reveal the ...
متن کاملEvaluation of the effect of spatial distribution of weeds on seed yield of lentil (Lens culinaris L.) in rainfed conditions
Weeds are one of the most important factors in reducing yield in legumes crops. Therefore, awareness of the interaction between weeds and crops as well as identification of their spatial variation pattern in the field is important. To investigate the the effect of weeds on seed yield of lentil, and also to study the spatial distribution pattern of weeds under rainfed conditions, a field experi...
متن کاملSpatial Data Mining: Association and Clustering
The explosive growth of spatial data and widespread use of spatial databases emphasize the need for the automated discovery of spatial knowledge. Spatial data mining is the process of discovering interesting and previously unknown, but potentially useful patterns from spatial databases. The complexity of spatial data and intrinsic spatial relationships limits the usefulness of conventional data...
متن کامل